COG0540


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0540, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Aspartate carbamoyltransferase, catalytic subunit
Function(s) descr. Nucleotide transport and metabolism (F)

Occurence in the database

COG0540 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1425 FBDBKF_08810 141480 142415 -1 pyrB aspartate carbamoyltransferase Morganella morganii S1
1 group_1425 EHELCC_12715 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S2
2 group_1425 NLDBIP_13055 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S4
3 group_1425 LHKJJB_13500 140198 141133 -1 pyrB aspartate carbamoyltransferase Morganella morganii S3
4 group_1425 HKOGLL_11530 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S5
5 group_1425 F4V73_RS10030 112047 112982 -1 pyrB aspartate carbamoyltransferase Morganella psychrotolerans
6 group_1425 PMI_RS17220 3781987 3782922 -1 pyrB aspartate carbamoyltransferase Proteus mirabilis HI4320