COG0441


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0441, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Threonyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0441 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1811 FBDBKF_13430 62469 64400 -1 thrS threonine--tRNA ligase Morganella morganii S1
1 group_1811 EHELCC_08665 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S2
2 group_1811 NLDBIP_08990 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S4
3 group_1811 LHKJJB_05275 44437 46368 -1 thrS threonine--tRNA ligase Morganella morganii S3
4 group_1811 HKOGLL_05640 195382 197313 1 thrS threonine--tRNA ligase Morganella morganii S5
5 group_1811 F4V73_RS03335 711415 713343 1 thrS threonine--tRNA ligase Morganella psychrotolerans
6 group_1811 PMI_RS05025 1098276 1100204 1 thrS threonine--tRNA ligase Proteus mirabilis HI4320