COG0439


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0439, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Biotin carboxylase
Function(s) descr. Lipid transport and metabolism (I)

Occurence in the database

COG0439 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2922 FBDBKF_13870 68214 69272 1 lysX Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily Morganella morganii S1
1 group_2922 EHELCC_11540 153090 154148 1 lysX Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily Morganella morganii S2
2 group_2922 NLDBIP_11885 153090 154148 1 lysX Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily Morganella morganii S4
3 group_2922 LHKJJB_11745 153090 154148 1 lysX Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily Morganella morganii S3
4 group_2922 HKOGLL_10355 153090 154148 1 lysX Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily Morganella morganii S5
5 group_2922 F4V73_RS12735 146860 147918 1 ATP-grasp domain-containing protein Morganella psychrotolerans