COG0341


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0341, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Preprotein translocase subunit SecF
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG0341 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2258 FBDBKF_17390 8363 9331 -1 secF Preprotein translocase subunit SecF Morganella morganii S1
1 group_2258 EHELCC_17285 8363 9331 -1 secF Preprotein translocase subunit SecF Morganella morganii S2
2 group_2258 NLDBIP_17910 33465 34433 1 secF Preprotein translocase subunit SecF Morganella morganii S4
3 group_2258 LHKJJB_17830 33463 34431 1 secF Preprotein translocase subunit SecF Morganella morganii S3
4 group_2258 HKOGLL_17840 33463 34431 1 secF Preprotein translocase subunit SecF Morganella morganii S5
5 group_2258 F4V73_RS16565 132066 133034 -1 secF protein translocase subunit SecF Morganella psychrotolerans
6 group_2258 PMI_RS00380 107820 108788 1 secF protein translocase subunit SecF Proteus mirabilis HI4320