COG0313


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0313, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 16S rRNA C1402 (ribose-2'-O) methylase RsmI
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0313 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_706 FBDBKF_03060 11203 12075 -1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella morganii S1
1 group_706 EHELCC_07475 235028 235900 1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella morganii S2
2 group_706 NLDBIP_07800 234901 235773 1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella morganii S4
3 group_706 LHKJJB_07335 198647 199519 1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella morganii S3
4 group_706 HKOGLL_03595 33868 34740 -1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella morganii S5
5 group_706 F4V73_RS11860 527217 528089 1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Morganella psychrotolerans
6 group_706 PMI_RS18375 4032526 4033404 1 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Proteus mirabilis HI4320