COG0293


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0293, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0293 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1397 FBDBKF_08625 106390 107019 1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella morganii S1
1 group_1397 EHELCC_12900 56706 57335 -1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella morganii S2
2 group_1397 NLDBIP_13240 56706 57335 -1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella morganii S4
3 group_1397 LHKJJB_13315 105108 105737 1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella morganii S3
4 group_1397 HKOGLL_11715 56706 57335 -1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella morganii S5
5 group_1397 F4V73_RS09850 73497 74126 1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Morganella psychrotolerans
6 group_1397 PMI_RS16980 3736820 3737449 1 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE Proteus mirabilis HI4320