COG0266


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0266, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Formamidopyrimidine-DNA glycosylase
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0266 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2161 FBDBKF_16265 40888 41697 1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella morganii S1
1 group_2161 EHELCC_16300 40888 41697 1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella morganii S2
2 group_2161 NLDBIP_17040 20473 21282 -1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella morganii S4
3 group_2161 LHKJJB_16960 23575 24384 -1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella morganii S3
4 group_2161 HKOGLL_16880 40888 41697 1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella morganii S5
5 group_2161 F4V73_RS17325 97593 98402 -1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Morganella psychrotolerans
6 group_2161 PMI_RS15645 3476758 3477582 1 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase Proteus mirabilis HI4320