COG0235


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0235, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation)
Function(s) descr. Amino acid transport and metabolism (E)
Carbohydrate transport and metabolism (G)

Occurence in the database

COG0235 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2662 FBDBKF_04645 128783 129430 1 fucA 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) Morganella morganii S1
1 group_2662 EHELCC_05935 188240 188887 1 fucA 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) Morganella morganii S2
2 group_2662 NLDBIP_06255 229305 229952 1 fucA 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) Morganella morganii S4
3 group_2662 LHKJJB_03135 206829 207476 1 fucA 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) Morganella morganii S3
4 group_2662 HKOGLL_06610 128693 129340 1 fucA 5-methylthioribulose/5-deoxyribulose/Fuculose 1-phosphate aldolase (methionine salvage, sugar degradation) Morganella morganii S5
5 group_2662 F4V73_RS09095 1902375 1903019 1 L-fuculose-phosphate aldolase Morganella psychrotolerans