COG0201


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0201, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Preprotein translocase subunit SecY
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG0201 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2379 FBDBKF_19145 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S1
1 group_2379 EHELCC_18890 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S2
2 group_2379 NLDBIP_18905 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S4
3 group_2379 LHKJJB_18760 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S3
4 group_2379 HKOGLL_18495 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S5
5 group_2379 F4V73_RS19020 16101 17432 1 secY preprotein translocase subunit SecY Morganella psychrotolerans
6 group_2379 PMI_RS16250 3591579 3592901 1 secY preprotein translocase subunit SecY Proteus mirabilis HI4320