COG0172


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0172, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Seryl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0172 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1223 FBDBKF_07115 91421 92713 1 serS serine--tRNA ligase Morganella morganii S1
1 group_1223 EHELCC_03855 93473 94765 -1 serS serine--tRNA ligase Morganella morganii S2
2 group_1223 NLDBIP_03855 93269 94561 -1 serS serine--tRNA ligase Morganella morganii S4
3 group_1223 LHKJJB_09685 93383 94675 -1 serS serine--tRNA ligase Morganella morganii S3
4 group_1223 HKOGLL_09290 96377 97669 1 serS serine--tRNA ligase Morganella morganii S5
5 group_1223 F4V73_RS01300 279296 280588 1 serS serine--tRNA ligase Morganella psychrotolerans
6 group_1223 PMI_RS03445 764633 765922 1 serS serine--tRNA ligase Proteus mirabilis HI4320