COG0087


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0087, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein L3
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0087 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2399 FBDBKF_19245 22460 23089 -1 rplC 50S ribosomal protein L3 Morganella morganii S1
1 group_2399 EHELCC_18990 22460 23089 -1 rplC 50S ribosomal protein L3 Morganella morganii S2
2 group_2399 NLDBIP_19005 22460 23089 -1 rplC 50S ribosomal protein L3 Morganella morganii S4
3 group_2399 LHKJJB_18860 22460 23089 -1 rplC 50S ribosomal protein L3 Morganella morganii S3
4 group_2399 HKOGLL_18595 22460 23089 -1 rplC 50S ribosomal protein L3 Morganella morganii S5
5 group_2399 F4V73_RS18920 7249 7878 1 rplC 50S ribosomal protein L3 Morganella psychrotolerans
6 group_2399 PMI_RS16150 3582732 3583361 1 rplC 50S ribosomal protein L3 Proteus mirabilis HI4320