COG0070


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0070, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Glutamate synthase domain 3
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0070 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3223 FBDBKF_03105 23369 24793 1 Glutamate synthase [NADPH] large chain Morganella morganii S1
1 group_3223 EHELCC_07430 222310 223734 -1 Glutamate synthase [NADPH] large chain Morganella morganii S2
2 group_3223 NLDBIP_07755 222183 223607 -1 Glutamate synthase [NADPH] large chain Morganella morganii S4
3 group_3223 LHKJJB_07290 185929 187353 -1 Glutamate synthase [NADPH] large chain Morganella morganii S3
4 group_3223 HKOGLL_03640 46034 47458 1 Glutamate synthase [NADPH] large chain Morganella morganii S5