COG0060


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0060, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Isoleucyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0060 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1130 FBDBKF_06450 127533 130346 -1 ileS isoleucine--tRNA ligase Morganella morganii S1
1 group_1130 EHELCC_09495 128105 130918 -1 ileS isoleucine--tRNA ligase Morganella morganii S2
2 group_1130 NLDBIP_09875 128105 130918 -1 ileS isoleucine--tRNA ligase Morganella morganii S4
3 group_1130 LHKJJB_07880 86320 89133 1 ileS isoleucine--tRNA ligase Morganella morganii S3
4 group_1130 HKOGLL_07430 86320 89133 1 ileS isoleucine--tRNA ligase Morganella morganii S5
5 group_1130 F4V73_RS15475 83233 86046 1 ileS isoleucine--tRNA ligase Morganella psychrotolerans
6 group_1130 PMI_RS00075 25832 28642 1 ileS isoleucine--tRNA ligase Proteus mirabilis HI4320