COG0056


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0056, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description FoF1-type ATP synthase, alpha subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG0056 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2070 FBDBKF_15485 21378 22919 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S1
1 group_2070 EHELCC_15845 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S2
2 group_2070 NLDBIP_16525 58444 59985 -1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S4
3 group_2070 LHKJJB_16280 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S3
4 group_2070 HKOGLL_16050 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S5
5 group_2070 F4V73_RS17660 174221 175762 -1 atpA F0F1 ATP synthase subunit alpha Morganella psychrotolerans
6 group_2070 PMI_RS15165 3364028 3365569 1 atpA F0F1 ATP synthase subunit alpha Proteus mirabilis HI4320