COG0052


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0052, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosomal protein S2
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0052 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1062 FBDBKF_06010 28080 28799 -1 rpsB 30S ribosomal protein S2 Morganella morganii S1
1 group_1062 EHELCC_09055 28652 29371 -1 rpsB 30S ribosomal protein S2 Morganella morganii S2
2 group_1062 NLDBIP_09435 28652 29371 -1 rpsB 30S ribosomal protein S2 Morganella morganii S4
3 group_1062 LHKJJB_08320 187867 188586 1 rpsB 30S ribosomal protein S2 Morganella morganii S3
4 group_1062 HKOGLL_07870 187867 188586 1 rpsB 30S ribosomal protein S2 Morganella morganii S5
5 group_1062 F4V73_RS15885 184406 185125 1 rpsB 30S ribosomal protein S2 Morganella psychrotolerans
6 group_1062 PMI_RS11285 2483658 2484383 -1 rpsB 30S ribosomal protein S2 Proteus mirabilis HI4320