COG0039


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0039, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Malate/lactate dehydrogenase
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG0039 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1389 FBDBKF_08575 98019 98957 1 mdh malate dehydrogenase Morganella morganii S1
1 group_1389 EHELCC_12950 64768 65706 -1 mdh malate dehydrogenase Morganella morganii S2
2 group_1389 NLDBIP_13290 64768 65706 -1 mdh malate dehydrogenase Morganella morganii S4
3 group_1389 LHKJJB_13265 96737 97675 1 mdh malate dehydrogenase Morganella morganii S3
4 group_1389 HKOGLL_11765 64768 65706 -1 mdh malate dehydrogenase Morganella morganii S5
5 group_1389 F4V73_RS09800 64601 65539 1 mdh malate dehydrogenase Morganella psychrotolerans
6 group_1389 PMI_RS16925 3728315 3729253 1 mdh malate dehydrogenase Proteus mirabilis HI4320