COG0021


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0021, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transketolase
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG0021 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1863 FBDBKF_13920 77592 79586 -1 tkt transketolase Morganella morganii S1
1 group_1863 EHELCC_11590 162468 164462 -1 tkt transketolase Morganella morganii S2
2 group_1863 NLDBIP_11935 162468 164462 -1 tkt transketolase Morganella morganii S4
3 group_1863 LHKJJB_11795 162468 164462 -1 tkt transketolase Morganella morganii S3
4 group_1863 HKOGLL_10405 162468 164462 -1 tkt transketolase Morganella morganii S5
5 group_1863 F4V73_RS12780 156417 158411 -1 tkt transketolase Morganella psychrotolerans
6 group_1863 PMI_RS01165 286327 288321 1 tkt transketolase Proteus mirabilis HI4320