COG0013


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0013, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Alanyl-tRNA synthetase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0013 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2034 FBDBKF_15240 59895 62522 1 alaS alanine--tRNA ligase Morganella morganii S1
1 group_2034 EHELCC_11005 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S2
2 group_2034 NLDBIP_11350 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S4
3 group_2034 LHKJJB_11210 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S3
4 group_2034 HKOGLL_09820 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S5
5 group_2034 F4V73_RS12205 21879 24506 -1 alaS alanine--tRNA ligase Morganella psychrotolerans
6 group_2034 PMI_RS01800 427567 430194 1 alaS alanine--tRNA ligase Proteus mirabilis HI4320