COG0012


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0012, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Ribosome-binding ATPase YchF, GTP1/OBG family
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0012 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_604 FBDBKF_01890 65905 66996 -1 ychF redox-regulated ATPase YchF Morganella morganii S1
1 group_604 EHELCC_02360 453725 454816 -1 ychF redox-regulated ATPase YchF Morganella morganii S2
2 group_604 NLDBIP_01100 225320 226411 1 ychF redox-regulated ATPase YchF Morganella morganii S4
3 group_604 LHKJJB_00935 166274 167365 -1 ychF redox-regulated ATPase YchF Morganella morganii S3
4 group_604 HKOGLL_00975 171785 172876 -1 ychF redox-regulated ATPase YchF Morganella morganii S5
5 group_604 F4V73_RS04235 896118 897209 -1 ychF redox-regulated ATPase YchF Morganella psychrotolerans
6 group_604 PMI_RS05230 1143741 1144832 -1 ychF redox-regulated ATPase YchF Proteus mirabilis HI4320