Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Morganella morganii S2 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Nucleotide excision repair Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Nucleotide excision repair pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K01972 | DNA ligase (NAD+) [EC:6.5.1.2] | 1 | 8 |
| K02202 | cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] | 0 | 0 |
| K02324 | DNA polymerase epsilon subunit 1 [EC:2.7.7.7] | 0 | 0 |
| K02325 | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | 0 | 0 |
| K02326 | DNA polymerase epsilon subunit 3 [EC:2.7.7.7] | 0 | 0 |
| K02327 | DNA polymerase delta subunit 1 [EC:2.7.7.7] | 0 | 0 |
| K02328 | DNA polymerase delta subunit 2 | 0 | 0 |
| K02335 | DNA polymerase I [EC:2.7.7.7] | 1 | 7 |
| K03006 | DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] | 0 | 0 |
| K03007 | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | 0 | 0 |
| K03008 | DNA-directed RNA polymerase II subunit RPB11 | 0 | 0 |
| K03009 | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | 0 | 0 |
| K03010 | DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] | 0 | 0 |
| K03011 | DNA-directed RNA polymerase II subunit RPB3 | 0 | 0 |
| K03012 | DNA-directed RNA polymerase II subunit RPB4 | 0 | 0 |
| K03013 | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 0 | 0 |
| K03014 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | 0 | 0 |
| K03015 | DNA-directed RNA polymerase II subunit RPB7 | 0 | 0 |
| K03016 | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | 0 | 0 |
| K03017 | DNA-directed RNA polymerase II subunit RPB9 | 0 | 0 |
| K03141 | transcription initiation factor TFIIH subunit 1 | 0 | 0 |
| K03142 | transcription initiation factor TFIIH subunit 2 | 0 | 0 |
| K03143 | transcription initiation factor TFIIH subunit 3 | 0 | 0 |
| K03144 | transcription initiation factor TFIIH subunit 4 | 0 | 0 |
| K03504 | DNA polymerase delta subunit 3 | 0 | 0 |
| K03505 | DNA polymerase delta subunit 4 | 0 | 0 |
| K03506 | DNA polymerase epsilon subunit 4 [EC:2.7.7.7] | 0 | 0 |
| K03657 | ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] | 1 | 7 |
| K03701 | excinuclease ABC subunit A | 1 | 7 |
| K03702 | excinuclease ABC subunit B | 1 | 7 |
| K03703 | excinuclease ABC subunit C | 1 | 7 |
| K03723 | transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] | 1 | 7 |
| K03868 | E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32] | 0 | 0 |
| K04802 | proliferating cell nuclear antigen | 0 | 0 |
| K06634 | cyclin H | 0 | 0 |
| K07466 | replication factor A1 | 0 | 0 |
| K10140 | DNA damage-binding protein 2 | 0 | 0 |
| K10570 | DNA excision repair protein ERCC-8 | 0 | 0 |
| K10609 | cullin 4 | 0 | 0 |
| K10610 | DNA damage-binding protein 1 | 0 | 0 |
| K10739 | replication factor A2 | 0 | 0 |
| K10740 | replication factor A3 | 0 | 0 |
| K10741 | replication factor A4 | 0 | 0 |
| K10747 | DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] | 0 | 0 |
| K10754 | replication factor C subunit 1 | 0 | 0 |
| K10755 | replication factor C subunit 2/4 | 0 | 0 |
| K10756 | replication factor C subunit 3/5 | 0 | 0 |
| K10838 | xeroderma pigmentosum group C-complementing protein | 0 | 0 |
| K10839 | UV excision repair protein RAD23 | 0 | 0 |
| K10840 | centrin-2 | 0 | 0 |
| K10841 | DNA excision repair protein ERCC-6 | 0 | 0 |
| K10842 | CDK-activating kinase assembly factor MAT1 | 0 | 0 |
| K10843 | DNA excision repair protein ERCC-3 [EC:5.6.2.4] | 0 | 0 |
| K10844 | DNA excision repair protein ERCC-2 [EC:5.6.2.3] | 0 | 0 |
| K10845 | TFIIH basal transcription factor complex TTD-A subunit | 0 | 0 |
| K10846 | DNA excision repair protein ERCC-5 | 0 | 0 |
| K10847 | DNA-repair protein complementing XP-A cells | 0 | 0 |
| K10848 | DNA excision repair protein ERCC-4 [EC:3.1.-.-] | 0 | 0 |
| K10849 | DNA excision repair protein ERCC-1 | 0 | 0 |
| K21987 | DNA-directed RNA polymerase II subunit GRINL1A | 0 | 0 |
| K23720 | UV-stimulated scaffold protein A | 0 | 0 |