Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Morganella morganii S4 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Base excision repair Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Base excision repair pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K01142 | exodeoxyribonuclease III [EC:3.1.11.2] | 1 | 7 |
| K01151 | deoxyribonuclease IV [EC:3.1.21.2] | 1 | 7 |
| K01246 | DNA-3-methyladenine glycosylase I [EC:3.2.2.20] | 1 | 7 |
| K01247 | DNA-3-methyladenine glycosylase II [EC:3.2.2.21] | 0 | 1 |
| K01972 | DNA ligase (NAD+) [EC:6.5.1.2] | 1 | 8 |
| K02324 | DNA polymerase epsilon subunit 1 [EC:2.7.7.7] | 0 | 0 |
| K02325 | DNA polymerase epsilon subunit 2 [EC:2.7.7.7] | 0 | 0 |
| K02326 | DNA polymerase epsilon subunit 3 [EC:2.7.7.7] | 0 | 0 |
| K02327 | DNA polymerase delta subunit 1 [EC:2.7.7.7] | 0 | 0 |
| K02328 | DNA polymerase delta subunit 2 | 0 | 0 |
| K02330 | DNA polymerase beta [EC:2.7.7.7 4.2.99.-] | 0 | 0 |
| K02332 | DNA polymerase gamma 1 [EC:2.7.7.7] | 0 | 0 |
| K02333 | DNA polymerase gamma 2 | 0 | 0 |
| K02335 | DNA polymerase I [EC:2.7.7.7] | 1 | 7 |
| K03504 | DNA polymerase delta subunit 3 | 0 | 0 |
| K03505 | DNA polymerase delta subunit 4 | 0 | 0 |
| K03506 | DNA polymerase epsilon subunit 4 [EC:2.7.7.7] | 0 | 0 |
| K03512 | DNA polymerase lambda [EC:2.7.7.7 4.2.99.-] | 0 | 0 |
| K03575 | A/G-specific adenine glycosylase [EC:3.2.2.31] | 1 | 7 |
| K03648 | uracil-DNA glycosylase [EC:3.2.2.27] | 1 | 7 |
| K03649 | double-stranded uracil-DNA glycosylase [EC:3.2.2.28] | 0 | 0 |
| K03652 | DNA-3-methyladenine glycosylase [EC:3.2.2.21] | 0 | 0 |
| K03660 | N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] | 0 | 0 |
| K04799 | flap endonuclease-1 [EC:3.1.-.-] | 0 | 0 |
| K04802 | proliferating cell nuclear antigen | 0 | 0 |
| K05522 | endonuclease VIII [EC:3.2.2.- 4.2.99.18] | 0 | 0 |
| K07462 | single-stranded-DNA-specific exonuclease [EC:3.1.-.-] | 1 | 7 |
| K07759 | poly(ADP-ribose) glycohydrolase [EC:3.2.1.143] | 0 | 0 |
| K08073 | bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] | 0 | 0 |
| K10563 | formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] | 1 | 7 |
| K10567 | endonuclease VIII-like 1 [EC:3.2.2.- 4.2.99.18] | 0 | 0 |
| K10568 | endonuclease VIII-like 2 [EC:3.2.2.- 4.2.99.18] | 0 | 0 |
| K10569 | endonuclease VIII-like 3 [EC:3.2.2.- 4.2.99.18] | 0 | 0 |
| K10747 | DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] | 0 | 0 |
| K10754 | replication factor C subunit 1 | 0 | 0 |
| K10755 | replication factor C subunit 2/4 | 0 | 0 |
| K10756 | replication factor C subunit 3/5 | 0 | 0 |
| K10771 | AP endonuclease 1 [EC:3.1.11.2] | 0 | 0 |
| K10773 | endonuclease III [EC:3.2.2.- 4.2.99.18] | 1 | 7 |
| K10776 | DNA ligase 3 [EC:6.5.1.1] | 0 | 0 |
| K10798 | poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30] | 0 | 0 |
| K10800 | single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] | 0 | 0 |
| K10801 | methyl-CpG-binding domain protein 4 [EC:3.2.2.-] | 0 | 0 |
| K10802 | high mobility group protein B1 | 0 | 0 |
| K10803 | DNA-repair protein XRCC1 | 0 | 0 |
| K10862 | tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-] | 0 | 0 |
| K10863 | aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72] | 0 | 0 |
| K11687 | poly(ADP-ribose) glycohydrolase ARH3 [EC:3.2.1.143] | 0 | 0 |
| K13529 | AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] | 0 | 0 |
| K20813 | thymine-DNA glycosylase [EC:3.2.2.29] | 0 | 0 |
| K21929 | uracil-DNA glycosylase [EC:3.2.2.27] | 0 | 0 |
| K24070 | poly [ADP-ribose] polymerase 1 [EC:2.4.2.30] | 0 | 0 |